Cicer arietinum

Overview
GenusCicer
Speciesarietinum
Common Namechickpea
AbbreviationC. arietinum
PloidyDiploid
Chromosome Number2n=16
Genome Size~740 Mbp
Available Markers54,442
Available Maps42
Available QTLs514
Available MTLs19
Available Traits50
Available Genomes3
Germplasm
NameType
209cultivar
2728(8)cultivar
81001cultivar
Amitbreeding_research_material
BGD1105breeding_research_material
BGD72cultivar
C214cultivar
C214_x_ILC3279-F2population
C214_x_WR315-F2population
CA 2139cultivar
CA2156cultivar
CA2156_x_JG62-RILpopulation
Castellanacultivar
CDC-Corinnebreeding_research_material
CDC-Frontiercultivar
CDC-Lunacultivar
Desicultivar
FLIP84-92ccultivar
FLIP84-92Ccultivar
FLIP91-22cultivar

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KEGG
CMap
Link to Map in CMap Reference
chickpea-CaCook Douglas Cook. UC Davis. 2009
chickpea-C214xILC3279-F2 Sabbavarapu et al. 2013
chickpea-C214xWR315-F2 Sabbavarapu et al. 2013
chickpea-FLIP84-92CxPI599072-RIL Santra et al. 2000.
chickpea-HadasxCr205-F2 Abbo et al. 2005
chickpea-HadasxICC5810-RIL Lichtenzveig et al. 2006
chickpea-ICC12004xLasseter-F2 Flandez-Galvez et al. 2003
chickpea-ICC3996xILWC184-F2 Aryamanesh et al. 2010
chickpea-ICC4958xICC17160 Das et al. 2015
chickpea-ICC4958xPI489777-RIL-2010 Nayak et al. 2010
chickpea-ICC4958xPI489777-RIL-2011 Gujaria et al. 2011
chickpea-ICC4958xPI489777-RIL-2012 Gaur et al. 2012
chickpea-ICC4958xPI489777-RIL-2012-2 Choudhary et al. 2012
chickpea-ICC4958xPI489777-RIL-2015 Khajuria et al. 2015
chickpea-ICC4958xPI489777-RIL-2015-2 Gaur et al. 2015
chickpea-ICC4958xPI489777-RIL-F10 Thudi et al. 2011
chickpea-ICC4958xPI489777-RIL-F10-2012 Hiremath et al. 2012
chickpea-ICC4991xICCV04516-F2 Kottapalli et al. 2009
chickpea-ICCV2xJG11-RIL Pushpavalli et al. 2015
chickpea-ICCV2xJG62-F10-RIL Anuradha et al. 2011
chickpea-ICCV2xJG62-RIL Vadez et al. 2012
chickpea-ICCV2xJG62-RIL-F10-2011 Gaur et al. 2011
chickpea-ICCV96029xAmit-F2 Anbessa et al. 2009
chickpea-ICCV96029xCDCCorinne-F2 Anbessa et al. 2009
chickpea-ICCV96029xCDCFrontier-F2 Anbessa et al. 2009
chickpea-ICCV96029xCDCFrontier-F2-2007 Tar'an et al. 2007
chickpea-ICCV96029xCDCLuna-F2 Anbessa et al. 2009
chickpea-ILC3279xICCV2-F3 Jamalabadi et al. 2013
chickpea-ILC3279xWR315-RIL Iruela et al. 2006
chickpea-ILC3279xWR315-RIL-2007 Iruela et al. 2007
chickpea-ILC588xILC3279-RIL Hamwieh et al. 2013
chickpea-ILC588xILC3279-RIL-F6 Rehman et al. 2011
chickpea-ILC72xCr5-10-RIL Madrid et al. 2008
chickpea-ILC72xCr5-10-RIL-2006 Cobos et al. 2006
chickpea-ILC72xCr5-10-RIL-2014 Madrid et al. 2014
chickpea-JG62xVijay-RIL-2011 Gowda et al. 2011
chickpea-JG62xVijay-VijayxICC4958-RIL Radhika et al. 2007
chickpea-LasseterxICC3996-F6-RIL Stephens et al. 2014
chickpea-LasseterxPI527930-F2 Collard et al. 2003.
chickpea-S95362xHowzat-F6-RIL Stephens et al. 2014
chickpea-VijayxICC4958-RIL-2011 Gowda et al. 2011
Transcripts

Below is a list of transcript assemblies that are available for Cicer arietinum. Click the assembly name for further details.

 
Assembly Name Analysis Name Date Constructed Stats
Cicer arietinum RefTrans V1 C. arietinum CSFL RefTrans V1 2015-10-19 Reads: 405 million
Contigs: 50,864
Singlets: NA
Cicer arietinum unigene v1 Cicer arietinum unigene v1 2010-12-27 Reads: 34,985
Contigs: 3,755
Singlets: 9,690
Community Annotation

Manual curation of genomes is very time consuming, but improves the quality of genome annotations.  Most manual curations are done on a community level with multiple research groups participating and dividing up the work.

The Genome Sequence Annotation Server (GenSAS) allows for community curation of the published annotations using the integrated Web Apollo and JBrowse, but also allows users to run annotation tools that can be used in the annotation process.

We have created projects for both C. arietinum chromosome scaffolds and are hosting them in GenSAS for community annotation.  If you would like to participate, please request a GenSAS account and type "chickpea annotation" in the "Purpose" field.  We will give you access to the GenSAS projects for these genomes.  

If you would like to coordinate the community annotation efforts, please let us know.  We are looking for members of the chickpea research community to set the annotation standards and monitor the community annotation.