Cicer arietinum - NCBI SRA datasets

RNA Datasets (as of 01/08/18)

Organism Name Study Accession Cultivar Instrument Reference
Cicer arietinum SRP115250   Illumina HiSeq 2500 Unpublished, ICRISAT
Cicer arietinum SRP072564 Himchana Illumina HiSeq 2000 Unpublished, Jawaharlal Nehru University
Cicer arietinum SRP072563 JGK3 Illumina HiSeq 2000 Unpublished, Jawaharlal Nehru University
Cicer arietinum SRP068490 ICC4958 Illumina Genome Analyzer IIx Unpublished, NIPGR
Cicer arietinum SRP084227   Ion Torrent PGM Unpublished, GEO
Cicer arietinum SRP078184   Illumina HiSeq 2000 Pandey et al, 2017
Cicer arietinum SRP076079   Illumina Genome Analyzer IIx Unpublished, National Institute of Plant Genome Research
Cicer arietinum SRP062733   454 GS FLX Titanium Unpublished; National Botanical Research Institute
Cicer arietinum DRP003545   Ion Torrent Proton Unpublished, RIKEN Center for Sustainable Resource Science Cellulose Production Research Team
Cicer arietinum SRP067982

ICC1205

ICC5434

Illumina HiSeq 2000 Unpublished, ICAR-Indian Institute of Pulses Research
Cicer arietinum SRP066464

WR315

BG256

454 GS FLX Titanium Unpublished, ICAR-National Research Centre on Plant Biotechnology
Cicer arietinum SRP062857

JG62

K850

WR315

Illumina HiSeq 2000 Jain et al, 2015
Cicer arietinum SRP061674 JG62/WR315 Ion Torrent PGM Unpublished, Junagadh Agricultural University
Cicer arietinum SRP059951   Illumina HiSeq 2000 Garg et al, 2016
Cicer arietinum SRP059919   Illumina HiSeq 2000 Garg et al, 2016
Cicer arietinum SRP049984 variety "Red Chickpea of Cassano delle Murgie” Illumina HiSeq 2500 Unpublished, Institute for Sustainable Plant Protection
Cicer arietinum SRP049935   454 GS FLX Titanium Unpublished, National Institute of Plant Genome Research
Cicer arietinum SRP048805   Illumina Genome Analyzer II Srivastava et al, 2015
Cicer arietinum SRP045172

ICC2580

 

Ion Torrent PGM Unpublished, Junagadh Agricultural University
Cicer arietinum SRP044343

CDC Frontier

Amit

CDC Xena

ICC 12512-1

Y9563-28

ICCV 96029

454 GS FLX Titanium Deokar et al, 2014
Cicer arietinum SRP042145

ICC4958

Illumina Genome Analyzer IIx Kohli et al, 2014
Cicer arietinum SRP041784

WR315

JG62

Illumina HiSeq 1000 Unpublished, Bose Institute
Cicer arietinum SRP034839

ICC4958

Illumina Genome Analyzer IIx Garg et al, 2015
Cicer arietinum SRP030647

ICC4958

Illumina Genome Analyzer IIx Jain et al, 2014
Cicer arietinum SRP017394

ICC4958

Illumina Genome Analyzer IIx Singh et al, 2013
Cicer arietinum SRP028391

BG-256

454 GS FLX Titanium Gupta et al, 2015
Cicer arietinum SRP007007

PI489777

454 GS FLX Titanium Jhanwar et al, 2012
Cicer arietinum SRP006039

ICC4958

454 GS FLX Titanium Garg et al, 2011
Cicer arietinum SRP012503

ICCV2

Illumina Genome Analyzer IIx Agarwal et al, 2012
Cicer arietinum SRP012503 ICCV2 454 GS FLX Titanium Agarwal et al, 2012
Cicer arietinum SRP011194 ICCV2 454 GS FLX Titanium Pradhan et al, 2014
Cicer arietinum SRP003236

ICC4958

Illumina Genome Analyzer II Garg et al, 2011
Cicer arietinum SRP006045

PI489777

ICCC37

ICC506

ICC4958

Illumina Genome Analyzer II Hiremath et al, 2011

 

DNA Datasets (as of 01/08/18)

Organism Name Study Accession Cultivar Instrument Reference
Cicer arietinum SRP084300   Illumina HiSeq 2000 Thudi et al, 2016
Cicer arietinum SRP108383   Illumina HiSeq 4000 Plekhanova et al, 2017
Cicer arietinum SRP113792 PK1880K Illumina HiSeq 4000 Unpublished; Cook Lab - University of California at Davis
Cicer arietinum SRP100678 AB001 Illumina HiSeq 2000 Li et al, 2017
Cicer arietinum SRP073357   Illumina HiSeq 2000 Unpublished, Cornell University
Cicer arietinum SRP093051

CDC Frontier

ICC4958

Illumina Genome Analyzer II Ruperao et al, 2014
Cicer arietinum SRP065750   Illumina HiSeq 2000 Ruperao et al, 2014
Cicer arietinum SRP058153 SBD377 x BGD112 population Illumina HiSeq 2000 Unpublished, National Institute of Plant Genome Research
Cicer arietinum SRP055744 PI489777 x ICC4958 RILs Illumina Genome Analyzer II Unpublished, University of Queensland
Cicer arietinum SRP052513   Illumina HiSeq 2000 Kujur et al, 2015
Cicer arietinum SRP044316

ICCV 96029

CDC Frontier

ICCV 96029 X CDC Frontier_RIL

Illumina HiSeq 2000 Deokar et al, 2014
Cicer arietinum SRP013365 ICC4958

454 GS FLX Titanium

Illumina Genome Analyzer IIx

Parween et al, 2015
Cicer arietinum SRP003330   454 GS FLX Unpublished, J. Craig Venter Institute