Data Overview

 
 Genes : 85359 mRNAs
SourceNumber of mRNAs
Cicer reticulatum L. PI489777 genome v126404
Cicer arietinum CDC Frontier genome v1.028269
Cicer arietinum ICC 4958 genome v2.030686
 
 Genomes
 
 Germplasm : 2429 germplasm
 
 Chickpea : 917
Germplasm TypeNumber of germplasm
breeding_research_material342
wild_unimproved287
cultivar220
population68
 
 Faba : 143
Germplasm TypeNumber of germplasm
wild_unimproved78
cultivar30
population19
breeding_research_material16
 
 Lentil : 635
Germplasm TypeNumber of germplasm
cultivar426
breeding_research_material97
wild_unimproved72
population40
 
 Pea : 719
Germplasm TypeNumber of germplasm
cultivar580
breeding_research_material76
population61
wild_unimproved2
 
 Maps : 167 maps
 
 Chickpea : 69
Map TypeNumber of maps
genetic65
physical3
Genetic1
 
 Faba : 21
Map TypeNumber of maps
genetic21
 
 Lentil : 32
Map TypeNumber of maps
genetic27
Genetic5
 
 Pea : 45
Map TypeNumber of maps
genetic45
 
 Markers : 137268 markers
 
 Chickpea : 58898
Marker TypeNumber of markers
Indel21504
SSR15145
SNP12394
DArT5610
DArT-SNP1568
genetic marker627
STMS576
EST marker294
CAPS253
RAPD235
EST-SSR200
CISR121
ISSR88
AFLP69
gene marker66
dCAPS38
SNAP28
RGA26
SCoT15
SCAR11
Isozyme10
DAMD10
DART9
DAF1
 
 Faba : 3441
Marker TypeNumber of markers
SNP1664
EST-SSR961
SSR403
RAPD130
CAPS101
STS66
Indel36
ISSR31
genetic marker14
SCAR11
Isozyme7
RGA6
gene marker6
PCR marker3
AFLP2
 
 Lentil : 63474
Marker TypeNumber of markers
SNP57803
EST-SSR2486
SSR2214
RAPD306
AFLP269
genetic marker140
SRAP98
CAPS56
ISSR52
EST21
DAMD10
Indel9
STMS4
RFLP4
gene marker1
RGA1
 
 Pea : 11455
Marker TypeNumber of markers
SNP6336
SSR3347
AFLP415
RAPD330
EST-SSR306
genetic marker171
CAPS146
EST marker75
STS72
gene marker47
SCAR32
Indel27
SSCP25
TRAP23
ISSR22
dCAPS17
RGA12
HRM11
KASP7
EST6
SRAP5
ASP5
ssAFLP5
DAF4
Isozyme3
STMS3
RFLP2
PCR marker1
 
 QTL/MTL : 2952 QTLs and 57 MTLs for 231 agronomic traits
 
 Chickpea 1104 QTL 19 MTL for 85 traits
Trait CategoryNumber of QTLsNumber of MTLs
100-seed weight680
100 Seed Weight880
3-Dimensional leaf area60
3-Dimensional leaf area growth rate10
Ascochyta blight resistance640
Ascochyta blight resistance70
Beta-carotene content40
Biomass60
Biomass yield per plant300
Botrytis grey mold resistance31
branch number20
bronze leave01
Canopy temperature differential60
cymose inflorescence01
Days to 50% flowering60
Days to 50% flowering920
Days to first flower20
Days to first flower80
days to first flowering70
Days to Flowering20
days to maturity950
days to maturity60
Delta Carbon Ratio20
Didymella rabei resistance50
Didymella rabei resistance effect on Days to first flower20
double podding01
drought susceptibility index10
Drought tolerance index270
early flowering01
empty pod number60
Evapotranspiration40
Evapotranspiration rate50
flower color02
flowering time101
Fusarium wilt resistance183
harvest index670
inhibitor of flower color01
Leaf area index40
Lutein concentration10
node of first flower40
Number of branches per plant130
Number of days between flowering and physiological maturity30
percent empty pod60
pigmentation01
plant height1210
Plant height growth rate50
Plant vigour score10
Plant width350
podnode01
Pods per plant480
Primary Branches10
projected leaf area30
Relative yield160
Root dry weight40
Root dry weight/total plant dry weight70
Root Dry Weight/ Total Plant Dry Weight60
Rooting depth10
Root length density70
Root surface area40
Root volume10
seed coat thickness01
Seed color180
seed diameter40
Seed iron and zinc concentration120
Seed iron concentration60
Seed per plant190
seed size01
Seed size index40
seeds per pod71
seed weight120
Seed yield per plant220
Seed yield per plot80
Seed zinc concentration40
shoot dry weight210
single flower01
Single seed weight30
Specific leaf area40
Specific leaf weight10
Stomatal conductance30
Transpiration30
Transpiration rate50
triple podded01
Uromyces rust resistance20
Vernalization20
Yield30
 
 Lentil 257 QTL 10 MTL for 43 traits
Trait CategoryNumber of QTLsNumber of MTLs
100-seed weight60
Ascochyta blight resistance380
Chlorophyll content30
cotyledon color01
Days to 50% flowering210
Drought tolerance10
flower color01
Flowering stage after 80 day growing period30
Fusarium wilt resistance01
ground seed color02
growth habit01
height of 1st node20
Iron concentration in plant structures210
Lateral root number40
Leaf area10
number branches at 1st node40
Number of branches per plant20
plant height100
Pod dehiscence30
pod indehiscence01
radiation frost tolerance01
Relative growth rate10
Root dry weight20
root length40
Root surface area20
Root thickness10
Root to shoot ratio40
seed coat pattern01
seed diameter230
Seedling vigor10
Seed per plant20
seed plumpness170
seed size10
seed thickness180
seed weight50
Seed yield per plant30
Selenium concentration240
shoot dry weight30
stem anthocyanin01
stem length90
Stemphylium blight resistance40
winter injury40
Winter survival100
 
 Pea 1320 QTL 22 MTL for 110 traits
Trait CategoryNumber of QTLsNumber of MTLs
1000-seed weight230
100 Seed Weight90
above ground biomass yield trait50
Aphanomyces root rot resistance1630
Ascochyta blight resistance1610
Beginning of seed filling80
Biomass yield per plant20
bleaching resistance210
Boron concentration120
Branching type110
branch number20
broomrape tubercle developmental stage20
Calcium concentration160
Chlorophyll content20
cold tolerance510
cold tolerance PQL260
Days to 50% flowering70
Days to first flower190
days to first flowering20
Days to Flowering70
Days to last flower150
days to maturity370
electrolyte leakage30
flower color02
Flowering duration180
flowering time21
flower shape01
fusarium resistance01
Fusarium root rot resistance70
Fusarium wilt resistance70
Galactinol Concentration20
glucose content10
gritty seed surface01
harvest index70
internode length01
internode number60
Iron concentration140
Leaf area60
Leaf area covered by sporulating pustules30
leaf color01
leaf gloss01
leaf number20
leaf shape03
Lodging30
lodging incidence170
Magnesium concentration100
Manganese concentration150
Molybdenum concentration40
mycosphaerella pinodes resistance620
Myo-inositol Concentration50
neoplastic pod01
node number120
node of first flower100
number broomrape tubercles per root length30
Number of branches per plant100
number of broomrape shoots per plant40
Number of days between flowering and physiological maturity60
number of flowering nodes90
number of green branches10
Number of rust aecial cups per leaf20
pea ascochyta blight resistance580
pea weevil resistance140
peduncle number20
percentage of broomrape seed germination20
Period between beginning of seed filling and maturity50
Phosphorus concentration140
plant height390
pod color01
pod number per peduncle10
pod number per plant140
pod shape01
pod width01
Potassium concentration130
protein content400
pseudomonas syringae resistance100
Raffinose Concentration50
raffinose content30
Raffinose Family Oligosaccharide Concentration60
resistance to crenate broomrape20
root length20
rubisco content10
Rust aecial pustules per leaf40
Rust infection frequency50
Rust severity80
saline sensitivity40
seed attachment01
seed coat color13
Seed color50
seed dimpling10
seedling cotyledon color01
seed number90
seed number per plant60
seed number per plot30
seed number per pod130
seed number per square meter80
seed shape31
seed weight110
seed yield530
Seed yield per plant130
Seed yield per plot60
Stachyose Concentration80
stem length60
Straw dry weight per plant90
Sucrose Concentration40
Sulfur concentration110
Thousand seed weight80
Uromyces rust disease resistance80
Verbascose Concentration40
winter injury160
Zinc concentration100
 
 Faba 271 QTL 6 MTL for 45 traits
Trait CategoryNumber of QTLsNumber of MTLs
10-seed weight per plant40
Abaxial stomatal frequency30
Ascochyta blight resistance430
Ascochyta fabae disease severity on leaves40
Ascochyta fabae disease severity on pods40
Ascochyta fabae disease severity on stems10
Ascochyta fabae severity on leaves60
Ascochyta fabae severity on pods20
Ascochyta fabae severity on stems20
Canopy temperature30
Canopy temperature under water stress10
cold tolerance50
Convicine concentration10
days to first flowering140
Days to Flowering190
determinate growth01
Difference between height of first node bearing pods and first node bearing flowers10
Flowering duration60
Flowers per inflorescence20
Height of first flowering node70
Height of first node bearing flowers30
Height of first node bearing pods10
hilum color02
Linoleic acid content30
linolenic acid content10
Oleic acid content70
Orobanche crenata resistance590
Orobanche foetida resistance120
Ovules per plant10
Ovules per pod40
palmitic acid content30
palmitoleic acid content10
Pod length160
Pod number per plant20
red seed coat01
seeds per pod110
short internodes01
solid flower pigment01
Stearic acid content30
stearidonic acid content10
Stomatal conductance20
Stomatal length20
Thermal time to flowering90
Vicine concentration10
Vicine-convicine concentration10
 
 Species : 33 species
GenusSpecies
Cicerarietinum, bijugum, canariense, chorassanicum, cuneatum, echinospermum, judaicum, macracanthum, microphyllum, multijugum, oxyodon, pinnatifidum, reticulatum, yamashitae
Lensculinaris, culinaris subsp. culinaris, culinaris subsp. odemensis, ervoides, nigricans, odemensis, orientalis, spp., tomentosus
Pisumabyssinicum, fulvum, sativum, sativum subsp. elatius, sativum subsp. sativum, sativum var. macrocarpon, sativum var. pumilio
Viciafaba, faba var. minor, sativa
 
 Transcripts
Analysis NameNumber of features
C. arietinum CSFL RefTrans V1Reference Transcriptomes : 50864
C. arietinum CSFL RefTrans V2Reference Transcriptomes : 56176
Cicer arietinum unigene v1contig : 3,755
reads : 34,985
singlets : 9,690
Franssen 2011 P. sativum unigenecontig : 42,000
reads : 2,209,735
singlets : 26,622
L. culinaris CSFL RefTrans V1Reference Transcriptomes : 33936
L. culinaris CSFL RefTrans V2Reference Transcriptomes : 33613
Lens culinaris unigene v1contig : 961
reads : 9,434
singlets : 3,092
Pisum sativum unigene v1contig : 3,095
reads : 17,717
singlets : 6,950
Pisum sativum unigene v2contig : 8,817
reads : 47,500
singlets : 26,029
P. sativum CSFL RefTrans V1Reference Transcriptomes : 45727
P. sativum CSFL RefTrans V2Reference Transcriptomes : 63990
P. sativum unigene wa1reads : 3,084,253
singlets : n/a
contig : 37,455
V. faba CSFL RefTrans V1Reference Transcriptomes : 69784
V. faba CSFL RefTrans V2Reference Transcriptomes : 37378