Data Overview

 
 Genes : 85359 mRNAs
SourceNumber of mRNAs
Cicer reticulatum L. PI489777 genome v126404
Cicer arietinum CDC Frontier genome v1.028269
Cicer arietinum ICC 4958 genome v2.030686
 
 Genomes
 
 Germplasm : 2823 germplasm
 
 Chickpea : 1041
Germplasm TypeNumber of germplasm
breeding_research_material344
cultivar328
wild_unimproved289
population80
 
 Faba : 177
Germplasm TypeNumber of germplasm
wild_unimproved78
cultivar64
population19
breeding_research_material16
 
 Lentil : 652
Germplasm TypeNumber of germplasm
cultivar443
breeding_research_material97
wild_unimproved72
population40
 
 Pea : 925
Germplasm TypeNumber of germplasm
cultivar777
breeding_research_material79
population65
wild_unimproved4
 
 Maps : 185 maps
 
 Chickpea : 81
Map TypeNumber of maps
genetic77
physical3
Genetic1
 
 Faba : 21
Map TypeNumber of maps
genetic21
 
 Lentil : 32
Map TypeNumber of maps
genetic27
Genetic5
 
 Pea : 50
Map TypeNumber of maps
genetic50
 
 Markers : 218337 markers
 
 Chickpea : 69931
Marker TypeNumber of markers
SNP21829
Indel21504
SSR16336
DArT5983
DArT-SNP1568
genetic marker627
STMS573
EST marker294
CAPS253
RAPD234
EST-SSR200
CISR121
ISSR87
AFLP69
gene marker66
dCAPS38
InDel34
SNAP28
RGA26
SCoT15
SCAR11
DAMD10
Isozyme10
DART9
KASP5
DAF1
 
 Faba : 3449
Marker TypeNumber of markers
SNP1664
EST-SSR966
SSR403
RAPD130
CAPS101
STS66
Indel36
ISSR31
genetic marker14
SCAR11
Isozyme7
RGA6
gene marker6
PCR marker3
TRAP3
AFLP2
 
 Lentil : 69646
Marker TypeNumber of markers
SNP63950
EST-SSR2470
SSR2276
RAPD306
AFLP269
genetic marker140
SRAP98
CAPS56
ISSR52
DAMD10
Indel9
RFLP4
STMS4
gene marker1
RGA1
 
 Pea : 75311
Marker TypeNumber of markers
SNP69702
SSR3487
AFLP415
SLAF332
RAPD330
EST-SSR306
genetic marker171
CAPS153
EST marker75
STS72
gene marker47
SCAR32
Indel27
SSCP25
TRAP23
ISSR22
EST17
dCAPS17
RGA12
HRM11
KASP7
SRAP5
ssAFLP5
ASP5
DAF4
STMS3
Isozyme3
RFLP2
PCR marker1
 
 Phenotypes : 332670 phenotypic measurements , 248 trait descriptors
Pea
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Pisum abyssinicum811316
Pisum fulvum61328
Pisum sativum101154283
Pisum spp.2478
Lentil
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Lens culinaris4743710
Lens ervoides5150
Lens nigricans584
Lens odemensis413
Lens spp.1011
Faba bean
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Vicia faba4022660
Chickpea
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Cicer acanthophyllum33
Cicer anatolicum1437
Cicer arietinum60109125
Cicer bijugum981
Cicer canariense33
Cicer chorassanicum810
Cicer cuneatum1024
Cicer echinospermum2482
Cicer flexuosum35
Cicer incisum11
Cicer isauricum11
Cicer judaicum9147
Cicer macracanthum624
Cicer microphyllum447
Cicer montbretii313
Cicer multijugum28
Cicer nuristanicum37
Cicer oxyodon411
Cicer pinnatifidum984
Cicer pungens310
Cicer reticulatum28298
Cicer songaricum39
Cicer spp.11
Cicer yamashitae26
 
 QTL/MTL : 3109 QTLs and 57 MTLs for 224 agronomic traits
 
 Chickpea 1310 QTL 19 MTL for 100 traits
Trait CategoryNumber of QTLsNumber of MTLs
100-seed weight1560
3-dimensional leaf area60
3-dimensional leaf area growth rate10
Above ground biomass yield trait80
Ascochyta blight resistance70
Ascochyta blight resistance640
Ascochyta blight resistance in adult plants10
Ascochyta blight resistance in seedlings20
Ascochyta rabiei disease severity120
Beta-carotene content40
Biomass60
Biomass yield per plant450
Botrytis grey mold resistance31
Branch number20
Bronze leave01
Canopy temperature differential60
Carbon isotope discrimination20
Cold tolerance130
Cymose inflorescence01
Days to 50% flowering60
Days to 50% flowering920
Days to first flower80
Days to first flower251
Days to flowering20
Days to maturity950
Days to maturity60
Didymella rabiei resistance50
Didymella rabiei resistance effect on days to first flower20
Double podding01
Drought susceptibility index10
Drought tolerance index270
Early flowering01
Empty pod number60
Evapotranspiration40
Evapotranspiration rate50
Filled pods per plot110
Flower color02
Fusarium wilt incidence50
Fusarium wilt resistance183
Harvest index790
Inhibitor of flower color01
Leaf area index40
Lutein content10
Node of first flower40
Number of branches per plant130
Number of days between flowering and physiological maturity30
Percent empty pod60
Percent pod setting210
Photosynthetic efficiency90
Phytophthora root rot survival index160
Phytophthora root rot survival index90
Pigmentation01
Plant height1210
Plant height20
Plant height growth rate50
Plant vigour score10
Plant width350
Podding visual score200
Podnode01
Pod number per plant480
Pod number per plant60
Primary branches10
Projected leaf area30
Relative yield160
Root dry weight40
Root dry weight/total plant dry weight130
Rooting depth10
Root length density70
Root surface area40
Root volume10
Seed coat thickness01
Seed color180
Seed diameter40
Seed iron and zinc concentration120
Seed iron concentration60
Seed number per plant190
Seed number per plot140
Seed number per pod71
Seed size01
Seed size20
Seed size index40
Seed tryptophan content80
Seed weight120
Seed weight30
Seed yield per plant240
Seed yield per plant90
Seed yield per plot80
Seed zinc concentration40
Single flower01
Single seed weight30
Specific leaf area40
Specific leaf weight10
Stem dry weight210
Stomatal conductance30
Transpiration30
Transpiration rate50
Triple podded01
Uromyces rust resistance20
Vernalization20
Yield30
 
 Lentil 257 QTL 10 MTL for 43 traits
Trait CategoryNumber of QTLsNumber of MTLs
100-seed weight60
Ascochyta blight resistance380
Chlorophyll content30
Cotyledon color01
Days to 50% flowering210
Drought tolerance10
Flower color01
Flowering stage after 80 day growing period30
Fusarium wilt resistance01
Ground seed color02
Growth habit01
Height of 1st node20
Iron content210
Lateral root number40
Leaf area10
Number branches at 1st node40
Number of branches per plant20
Plant height100
Pod dehiscence30
Pod indehiscence01
Radiation frost tolerance01
Relative growth rate10
Root dry weight20
Root length40
Root surface area20
Root thickness10
Root to shoot ratio40
Seed coat pattern01
Seed diameter230
Seedling vigor10
Seed number per plant20
Seed plumpness170
Seed size10
Seed thickness180
Seed weight50
Seed yield per plant30
Selenium concentration240
Stem anthocyanin01
Stem dry weight30
Stem length90
Stemphylium blight resistance40
Winter injury40
Winter survival100
 
 Pea 1271 QTL 22 MTL for 107 traits
Trait CategoryNumber of QTLsNumber of MTLs
1000-seed weight310
100-seed weight90
Above ground biomass yield trait50
Aphanomyces root rot resistance1630
Ascochyta blight resistance1610
Beginning of seed filling80
Biomass yield per plant20
Bleaching resistance210
Boron concentration120
Branching type110
Branch number20
Broomrape tubercle developmental stage20
Calcium concentration160
Chlorophyll content20
Cold tolerance510
Cold tolerance pql260
Cotyledon color01
Days to 50% flowering70
Days to first flower231
Days to flowering70
Days to last flower150
Days to maturity370
Electrolyte leakage30
Flower color02
Flowering duration180
Flower shape01
Fusarium-related plant height loss20
Fusarium-related plant weight loss20
Fusarium resistance01
Fusarium root disease severity20
Fusarium root rot resistance70
Fusarium wilt resistance70
Galactinol concent20
Glucose content10
Gritty seed surface01
Harvest index70
Internode length01
Internode number60
Iron content140
Leaf area60
Leaf area covered by sporulating pustules30
Leaf color01
Leaf gloss01
Leaf number20
Leaf shape23
Lodging200
Magnesium content100
Manganese content150
Molybdenum content40
Mycosphaerella pinodes resistance620
Myo-inositol content50
Neoplastic pod01
Node of first flower100
Number broomrape tubercles per root length30
Number of branches per plant100
Number of broomrape shoots per plant40
Number of days between flowering and physiological maturity60
Number of flowering nodes90
Number of green branches10
Number of nodes120
Pea weevil resistance140
Peduncle number20
Percentage of broomrape seed germination20
Period between beginning of seed filling and maturity50
Phosphorus concentration140
Plant height390
Pod color01
Pod number per peduncle10
Pod number per plant140
Pod shape01
Pod width01
Potassium concentration130
Protein content400
Pseudomonas syringae resistance100
Raffinose content80
Raffinose family oligosaccharides content60
Resistance to crenate broomrape20
Root length20
Rubisco content10
Rust aecial pustules per leaf60
Rust infection frequency50
Rust severity80
Saline sensitivity40
Seed attachment01
Seed coat color13
Seed color50
Seed dimpling10
Seed number90
Seed number per plant60
Seed number per plot30
Seed number per pod130
Seed number per square meter80
Seed shape31
Seed weight110
Seed yield530
Seed yield per plant130
Seed yield per plot60
Stachyose content80
Stem length60
Straw dry weight per plant90
Sucrose content40
Sulfur concentration110
Uromyces rust resistance80
Uromyces rust resistance10
Verbascose content40
Winter injury160
Zinc concentration100
 
 Faba 271 QTL 6 MTL for 41 traits
Trait CategoryNumber of QTLsNumber of MTLs
10-seed weight per plant40
Abaxial stomatal frequency30
Ascochyta blight resistance430
Ascochyta fabae severity on leaves100
Ascochyta fabae severity on pods60
Ascochyta fabae severity on stems30
Canopy temperature30
Canopy temperature under water stress10
Cold tolerance50
Convicine concentration10
Days to first flower140
Days to flowering190
Determinate growth01
Difference between height of first node bearing pods and first node bearing flowers10
Flowering duration60
Flowers per inflorescence20
Height of first flowering node100
Height of first node bearing pods10
Hilum color02
Linoleic acid content30
Linolenic acid content10
Oleic acid content70
Orobanche crenata resistance590
Orobanche foetida resistance120
Ovules per plant10
Ovules per pod40
Palmitic acid content30
Palmitoleic acid content10
Pod length160
Pod number per plant20
Red seed coat01
Seed number per pod110
Short internodes01
Solid flower pigment01
Stearic acid content30
Stearidonic acid content10
Stomatal conductance20
Stomatal length20
Thermal time to flowering90
Vicine concentration10
Vicine-convicine concentration10
 
 Species : 33 species
GenusSpecies
Cicerarietinum, bijugum, canariense, chorassanicum, cuneatum, echinospermum, judaicum, macracanthum, microphyllum, multijugum, oxyodon, pinnatifidum, reticulatum, yamashitae
Lensculinaris, culinaris subsp. culinaris, culinaris subsp. odemensis, ervoides, nigricans, odemensis, orientalis, spp., tomentosus
Pisumabyssinicum, fulvum, sativum, sativum subsp. elatius, sativum subsp. sativum, sativum var. macrocarpon, sativum var. pumilio
Viciafaba, faba var. minor, sativa
 
 Transcripts
Analysis NameNumber of features
C. arietinum CSFL RefTrans V1Reference Transcriptomes : 50864
C. arietinum CSFL RefTrans V2Reference Transcriptomes : 56176
Cicer arietinum unigene v1contig : 3,755
reads : 34,985
singlets : 9,690
Franssen 2011 P. sativum unigenecontig : 42,000
reads : 2,209,735
singlets : 26,622
L. culinaris CSFL RefTrans V1Reference Transcriptomes : 33936
L. culinaris CSFL RefTrans V2Reference Transcriptomes : 33613
Lens culinaris unigene v1contig : 961
reads : 9,434
singlets : 3,092
Pisum sativum unigene v1contig : 3,095
reads : 17,717
singlets : 6,950
Pisum sativum unigene v2contig : 8,817
reads : 47,500
singlets : 26,029
P. sativum CSFL RefTrans V1Reference Transcriptomes : 45727
P. sativum CSFL RefTrans V2Reference Transcriptomes : 63990
P. sativum unigene wa1reads : 3,084,253
singlets : n/a
contig : 37,455
V. faba CSFL RefTrans V1Reference Transcriptomes : 69784
V. faba CSFL RefTrans V2Reference Transcriptomes : 37378