Data Overview

 
 Genes : 85359 mRNAs
SourceNumber of mRNAs
Cicer arietinum CDC Frontier genome v1.028269
Cicer arietinum ICC 4958 genome v2.030686
Cicer reticulatum L. PI489777 genome v126404
 
 Genomes
 
 Germplasm : 624 germplasm
 
 Chickpea : 417
Germplasm TypeNumber of germplasm
wild_unimproved287
cultivar57
breeding_research_material37
population36
 
 Faba : 80
Germplasm TypeNumber of germplasm
wild_unimproved43
breeding_research_material16
population15
cultivar6
 
 Lentil : 33
Germplasm TypeNumber of germplasm
population14
breeding_research_material9
cultivar9
wild_unimproved1
 
 Pea : 94
Germplasm TypeNumber of germplasm
population35
cultivar34
breeding_research_material23
wild_unimproved2
 
 Maps : 105 maps
 
 Chickpea : 42
Map TypeNumber of maps
genetic40
physical2
 
 Faba : 17
Map TypeNumber of maps
genetic17
 
 Lentil : 18
Map TypeNumber of maps
genetic18
 
 Pea : 28
Map TypeNumber of maps
genetic28
 
 Markers : 114972 markers
 
 Chickpea : 54442
Marker TypeNumber of markers
Indel21504
SSR14688
SNP10467
DArT5610
STMS554
EST marker294
CAPS237
RAPD237
genetic marker220
EST-SSR200
CISR121
ISSR87
AFLP69
gene marker50
SNAP28
RGA26
SCoT15
Isozyme10
SCAR10
DAMD10
dCAPS5
 
 Faba : 3431
Marker TypeNumber of markers
SNP1662
EST-SSR961
SSR395
RAPD132
CAPS101
STS66
Indel36
ISSR31
genetic marker14
SCAR11
Isozyme7
RGA6
gene marker4
PCR marker3
AFLP2
 
 Lentil : 50058
Marker TypeNumber of markers
SNP46098
EST-SSR2473
SSR770
RAPD314
AFLP209
CAPS56
ISSR55
SRAP50
DAMD10
Indel9
STMS4
genetic marker4
RFLP4
gene marker1
RGA1
 
 Pea : 7041
Marker TypeNumber of markers
SSR2747
SNP2688
AFLP415
RAPD333
EST-SSR297
CAPS141
genetic marker88
EST marker75
STS72
SCAR28
Indel27
SSCP25
ISSR23
dCAPS16
gene marker14
RGA12
HRM11
EST6
ssAFLP5
ASP5
DAF4
Isozyme3
STMS3
RFLP2
PCR marker1
 
 QTL/MTL : 1694 QTLs and 57 MTLs for 150 agronomic traits
 
 Chickpea 514 QTL 19 MTL for 50 traits
Trait CategoryNumber of QTLsNumber of MTLs
100-seed weight680
Ascochyta blight resistance490
Ascochyta blight resistance70
Beta-carotene content40
Biomass yield per plant80
Botrytis grey mold resistance31
bronze leave01
Canopy temperature differential60
cymose inflorescence01
Days to 50% flowering360
Days to 50% flowering60
Days to first flower80
Days to first flower20
days to maturity500
days to maturity60
Didymella rabei resistance50
Didymella rabei resistance effect on Days to first flower20
double podding01
Drought tolerance index110
early flowering01
empty pod number60
flower color02
flowering time01
Fusarium wilt resistance23
harvest index320
inhibitor of flower color01
Lutein concentration10
Number of branches per plant130
Number of days between flowering and physiological maturity30
percent empty pod60
pigmentation01
plant height290
Plant width330
podnode01
Pods per plant310
Relative yield10
seed coat thickness01
Seed color180
seed diameter40
Seed per plant190
seed size01
seeds per pod01
Seed yield per plant220
Seed yield per plot80
shoot dry weight70
single flower01
Single seed weight30
Stomatal conductance30
triple podded01
Uromyces rust resistance20
 
 Lentil 150 QTL 10 MTL for 25 traits
Trait CategoryNumber of QTLsNumber of MTLs
100-seed weight60
Ascochyta blight resistance380
cotyledon color01
Days to 50% flowering210
flower color01
Flowering stage after 80 day growing period30
Fusarium wilt resistance01
ground seed color02
growth habit01
height of 1st node20
number branches at 1st node40
Number of branches per plant20
plant height90
Pod dehiscence30
pod indehiscence01
radiation frost tolerance01
seed coat pattern01
seed diameter190
seed plumpness110
seed thickness120
Seed yield per plant30
stem anthocyanin01
Stemphylium blight resistance40
winter injury40
Winter survival90
 
 Pea 820 QTL 22 MTL for 68 traits
Trait CategoryNumber of QTLsNumber of MTLs
1000-seed weight180
above ground biomass yield trait50
Aphanomyces root rot resistance1630
Ascochyta blight resistance1120
bleaching resistance210
branch number20
broomrape tubercle developmental stage20
cold tolerance510
cold tolerance PQL260
Days to 50% flowering70
days to first flowering20
days to maturity240
electrolyte leakage30
flower color02
flowering time01
flower shape01
fusarium resistance01
Fusarium root rot resistance70
Fusarium wilt resistance70
glucose content10
gritty seed surface01
harvest index40
internode length01
internode number60
leaf color01
leaf gloss01
leaf number20
leaf shape03
lodging incidence140
mycosphaerella pinodes resistance620
neoplastic pod01
node number120
node of first flower100
number broomrape tubercles per root length30
number of broomrape shoots per plant40
number of flowering nodes60
number of green branches10
pea ascochyta blight resistance580
pea weevil resistance140
peduncle number20
percentage of broomrape seed germination20
plant height210
pod color01
pod number per peduncle10
pod number per plant70
pod shape01
pod width01
protein content290
pseudomonas syringae resistance20
raffinose content30
resistance to crenate broomrape20
root length20
rubisco content10
saline sensitivity40
seed attachment01
seed coat color13
Seed color50
seed dimpling10
seedling cotyledon color01
seed number90
seed number per plot30
seed number per pod20
seed number per square meter80
seed shape31
seed weight80
seed yield500
Seed yield per plot10
stem length60
 
 Faba 210 QTL 6 MTL for 35 traits
Trait CategoryNumber of QTLsNumber of MTLs
10-seed weight per plant40
Abaxial stomatal frequency30
Ascochyta blight resistance430
Ascochyta fabae severity on leaves60
Ascochyta fabae severity on pods20
Ascochyta fabae severity on stems20
Canopy temperature30
Canopy temperature under water stress10
cold tolerance50
Convicine concentration10
days to first flowering140
determinate growth01
Difference between height of first node bearing pods and first node bearing flowers10
Flowering duration60
Flowers per inflorescence20
Height of first node bearing flowers30
Height of first node bearing pods10
hilum color02
Linoleic acid content20
Oleic acid content40
Orobanche crenata resistance540
Orobanche foetida resistance120
Ovules per plant10
Ovules per pod40
Pod length160
Pod number per plant20
red seed coat01
seeds per pod110
short internodes01
solid flower pigment01
Stearic acid content10
Stomatal conductance20
Stomatal length20
Vicine concentration10
Vicine-convicine concentration10
 
 Species : 30 species
GenusSpecies
Cicerarietinum, bijugum, canariense, chorassanicum, cuneatum, echinospermum, judaicum, macracanthum, microphyllum, multijugum, oxyodon, pinnatifidum, reticulatum, yamashitae
Lensculinaris, culinaris subsp. culinaris, culinaris subsp. odemensis, ervoides, nigricans, orientalis
Pisumabyssinicum, fulvum, sativum, sativum subsp. elatius, sativum subsp. sativum, sativum var. macrocarpon, sativum var. pumilio
Viciafaba, faba var. minor, sativa
 
 Transcripts
Analysis NameNumber of features
C. arietinum CSFL RefTrans V1Reference Transcriptomes : 50864
Cicer arietinum unigene v1reads : 34,985
contig : 3,755
singlets : 9,690
Franssen 2011 P. sativum unigenereads : 2,209,735
contig : 42,000
singlets : 26,622
L. culinaris CSFL RefTrans V1Reference Transcriptomes : 33936
Lens culinaris unigene v1reads : 9,434
contig : 961
singlets : 3,092
Pisum sativum unigene v1reads : 17,717
contig : 3,095
singlets : 6,950
Pisum sativum unigene v2reads : 47,500
contig : 8,817
singlets : 26,029
P. sativum CSFL RefTrans V1Reference Transcriptomes : 45727
P. sativum unigene wa1reads : 3,084,253
contig : 37,455
singlets : n/a
V. faba CSFL RefTrans V1Reference Transcriptomes : 69784