BLAST


BLAST Search

Search for one or more of your sequences (using BLAST). First pick a query type (nucleotide or protein). You will be able to set search parameters on the next page. Choose the appropriate program based on the Query type and Target database type. Please click on the program name to view the search form.

Query Type Database Type BLAST Program
Nucleotide Nucleotide blastn: Search a nucleotide database using a nucleotide query.
Protein blastx: Search protein database using a translated nucleotide query.
Protein Nucleotide tblastn: Search translated nucleotide database using a protein query.
Protein blastp: Search protein database using a protein query.
BLAST Reference
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403–410.

Description and source of BLAST databases

Database Name Source
NCBI ESTs Species specific ESTs from NCBI dbEST, downloaded 6/13/17
Unigene v1 and v2 Species specific assemblies of NCBI dbEST data performed by CSFL
CSFL RefTrans v1 and v2 Species specific assemblies of filtered RNA-seq reads and ESTs performed by CSFL; v1 (2015), v2 (2017)
Pisum sativum unigene WA1 Assembled by CSFL
Pisum sativum unigene Franssen  Franssen et al, 2011
Cicer arietinum CDC Frontier v1.0 genome Varshney et al, 2013
Cicer arietinum ICC 4958 v2.0 genome Parween et al, 2015
Cicer reticulatum PI489777 v1.0 genome Gupta et al, 2016
Glycine max Wm82.a2.v1 genome JGI Phytozyme 10.3 and Schmutz et al. 2010
Lotus japonicus v3.0 genome Miyakogusa.jp 3.0 and Sato et al. 2008
Medicago truncatula Mt4.0v1 genome Medicago truncatula Genome Project, JCVI and Young et al. 2011